Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0001362 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0001362 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18124
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (29.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18124

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (29.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001362_2466_2798	F019824	N/A	MDKYITDNFTGSIDDLLNHCSNLDTTKVEEQVKAEEKEACIQVIMKELECDEAQAEVIYNEIALAEVKETVDKMVAEGLLYVSGHNEDGEPLFQLTELGKAVRNELDNGK
Ga0334979_0001362_3513_3785	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRSVASGRYKISGSQKTGKRGKPSIVYTYESIATATVSATETAVASSN
Ga0334979_0001362_3862_4071	F079812	N/A	MSTNYVTDGANRRIGYVKETNSVSYAQNQNGKNVGYFNKSSNTTFDSNGKRYGSGNLTNALIFKDSGKF
Ga0334979_0001362_4662_4913	F039627	N/A	MTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSKTSDSNKPVEYVKESEIKPKKTIKKKN
Ga0334979_0001362_5249_5755	F023346	N/A	MNNINKNIIITYAKALRTIQKEQIDPYIELIEKELIKLFPELEHREDNALNWAYDILNAESNTEVVETLTRLEKIINNERKEKWNCDYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITEIESKLNYYESELDKLHFELKRMRSDYPHEPTN
Ga0334979_0001362_6347_6601	F001840	GGA	MKDQDSIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLSGRILPWRERLRWCWQILRHGKPWSDFIILNTENQKQLKEFLNECK
Ga0334979_0001362_7186_7419	F006260	N/A	MEKELTIKDKVTNPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYKTEGESQADIEDFQAFRSFLYDVQEYNNGGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0001362

Overview

Ecosystem & Geography

Associated Families

Sequences