Scaffold Ga0334979_0001014

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0001014
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20886
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026824	Metagenome / Metatranscriptome	196	Y
F026863	Metagenome / Metatranscriptome	196	Y
F053807	Metagenome / Metatranscriptome	140	Y
F088761	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001014_10660_10917	F026863	N/A	MENKEVKIQKIPLDALIETLVSLYNQGIDYIDISGKPGTDFDSMAIVFTKDYMTEEGKKNFIEYDELDLEIGPGKLTDDDINQLI
Ga0334979_0001014_5315_5554	F053807	N/A	MSYSLIFSAKPHCTHTITIYEPDQQNSSYRRTINSCSKLIDSIFAVKANYKPSKRLHIKGRRYMYISSDEYKLIRFKNY
Ga0334979_0001014_8311_8694	F088761	N/A	MTKNYVINNGSFTANGNFSGYTALGERVHIFGRQMEALSWKSNADVTFPFYAIGQMKQINQLNEKGETIGTADRLTALSAFKSRDEIKQAHADSTLLDIEIQQEIKAQASSAGLTESAINSLLSVAF
Ga0334979_0001014_9355_9600	F026824	N/A	MVVLLLLGCIVGLLSVIVCIWGFAHFEEWEIGIEFLPKDYNNFELGISNRNYELTDGGLEQELRIGLLLFTFFIMFRRFDA