Scaffold Ga0334979_0000763

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000763
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24274
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036141	Metagenome / Metatranscriptome	170	Y
F048791	Metagenome / Metatranscriptome	147	Y
F057907	Metagenome / Metatranscriptome	135	Y
F069774	Metagenome	123	Y
F074495	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000763_15895_16131	F036141	GAG	VEWLVPLAVAVIGGPLVVVVQSLRKENTSQHAEARELLKMVAGKVDKVDDKLDGHISWHLSRTRKPKVKKDEVIIKAD
Ga0334979_0000763_16131_16346	F057907	AGGA	MKCTTCSTPIEEENDLKRQLCFKCHVKGIRFGFVSVGYGQSEWNNSTIRETQRMYEAMPNVEKVSTRRELI
Ga0334979_0000763_21963_22292	F069774	AGGA	MKAVWGYYESSSIQGKSNSNMVRAFNTLKRDLKRQQDDLLMDHQDESTVSGGNASTFQFHYLLIADTTPMSASTVVPTAATFDANQGATGTASTYFETRRDFYEPGRGF
Ga0334979_0000763_8733_9524	F048791	AGGAG	MAINFSNANLTLAQMRTFVGELSDLDIGFDGNDDISTDLVNGFIKEGFQKIVALSNRYPFYQSTYGFTTVANQRNYSVFGRILPSIETVTITDIQQLIAVVNNTDGGNSLIYLDQARCESIWVGTSDQPETPAYFSIWANQLNLWPKPDQTYSMTIRGFRIPSLSWLQDENLAIDIDPQMQLPLINYVMARIFQFQEDTEMANEYMRGFEKAVAIIQGQLTAPSSNRQLIMSGGLQLQAYDFAPFDTGMRVLPGSPYPLGVAY
Ga0334979_0000763_9538_9858	F074495	AGAAGG	MNKESQSVGQGLAGTQPYGAVEGARLVGNARADYHAGAVVGSVEVAPPSGVAYGNVHYKNGLCQATNSKEEECKAPKAKGTDYCIGHLRRMNAIGDNKDAALDPKE