Scaffold Ga0334979_0000625

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000625
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26833
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F034904	Metagenome / Metatranscriptome	173	N
F039533	Metagenome / Metatranscriptome	163	N
F042808	Metagenome / Metatranscriptome	157	N
F048938	Metagenome / Metatranscriptome	147	Y
F054609	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000625_1319_1516	F001259	GAG	MRDCAFIYVNKTNGMVRVESLDTAKHIDGNPEWKHVSTVNPYVALEQILRAKGKDRNLIIKHLLA
Ga0334979_0000625_15611_16699	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCSREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADVGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVQTTNLFKQPGLTGAQKPLTQGSLTILAYNPTTLLLTQVAVWGPSEQNPEYRRTYLVGMPEVCGGANSCSTTQDNCCIDNGDGCVPADEACTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQFRFGGFI
Ga0334979_0000625_21009_23048	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLKFADPTVLYNGGYYNAAVQSAFKEGFFQGCGTYTADNEDPYIFVSIGGKVFQIDINAGFSVTDITPINFQFQIQTRGRVSNVATYVCGAPHGLSPGMVVRLPEPPGASFPQGFFGDFLVQTTPSLTTFTTYSPGVDAGPLLGPTFNAYQLAANNPQILHVYFQQAENWMIVQDTQNQPYLFDGSTLRRATGEEVPTGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFINEGGAFAVSSGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLNYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFSEFGNTPISRQVTRALAYDTDFYLTAASSVNFDNRLLMTIQPQKVNNRGIIHRGVVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTIRIQKQERCFMFGLNQGDIGLFEVTKNGQFDFDGFDDVPIDWTIETRSLTFGEPTNKKRLVSAEQWYDQVMGNIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE
Ga0334979_0000625_2547_2903	F048938	GGA	MNIEETKEAIRVMQAFVDGKDLEVLGPVGKWEPVHFPRWGWDDTKYRIKPTATLRPWTADEVPLGAWMRTKNSPHSGRRIMICGTYDEGVRSTWLVTSEHSTDCGKTWLPCGVIEESK
Ga0334979_0000625_25972_26832	F039533	GGA	MLEAEQPRSRNRARINATFNGNPPYSEEEARDNKIQTNVNFLEGTRIIHAARQQFTNAFLKPQNYFSVGLDTGPRDKRTEWGNIITKQLNRVMKRSPKYSTVLESQFAATVLHGIGPVTWLRDREWCPSARGTEDILVPTNTLTTMENMSHFAIYTSFTAADLIRMTRGENVDPGWNLKLVNELLAAMIQREATSLQVNDWSGQYFPEKIEEDFKENSGYWGSDATPVLRCYDFYFLDTTSDDPSWRRRIIVDQYNSGIGNMQTAGEWLFNAGDRCYGRDIFELMHI
Ga0334979_0000625_2900_3187	F054609	GAG	VQKSWIEDSKETPMNSLIQNAVARGWISFPHPAAVTAHPDVVKARLNSPDYNAQRAWKLWNEGQSLAYVAKAVGVKKRCVMAIIEEGKSKAKGEK