Scaffold Ga0334979_0000587

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000587
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27382
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012434	Metagenome	280	Y
F026503	Metagenome	197	N
F064515	Metagenome	128	N
F077042	Metagenome	117	N
F082107	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000587_12095_12727	F077042	N/A	MSPKLITAALAATVVCFAGVGVITVKSVSKHIAASDKEFAMTSNVLSPLFDVYGLEIVDGQAKASKGLIDPKAFCASLNKLQAEAERLLAEFGNPADLLAQHKLVAAYLKKARDLCDRGEISTLNSPAMTAELYAVIEPMTGLINKTLQDQLALSRTHKDAADQALLTFERFASVAAGLGIVFAVAPWIGAKKKPAAAIAPKVRKKKVKR
Ga0334979_0000587_17503_18303	F026503	N/A	MIDIKTSFSQLEMQLHLLAKAAKVDLGSVIKEEAKYAIQTIVKFTRPKQKAQGVNAVRGDFNKLAEPLVYQDLQAKATEGGFYKSMARYVRNRKVEKLRLLLNNPKLSHYYGKPLLESEDAIKKYHRSKRNANGRIEGKPRVLAFGLDFRRVRKTMEDRVGWSVSGWRSSAIVTGARYKKFSDKLKPQAGGNTLFGSVRSTFGPDPFIKATASNVKISNYQRMIDGTINSRIKTTTRKVAAVLANRAVNLGFTRVGGAMPIKTPTA
Ga0334979_0000587_26221_26385	F012434	GAGG	MTSQSALTQALVLAITAPDQQRADRAIALAESIGAGCTARQIANAKRNAAKLTK
Ga0334979_0000587_26759_27163	F082107	N/A	MTTEQHHEILTELRAIRAALEFKPAAAPQPAATIKIATPGDLPPPAIEIADAGSVQIHFGKNAGTPISSLSDKQLLWYGADRPAQLKKDGTPFAPREADVQLLNACRTLWQQRKSGAPIVLASQPADDGENVPF
Ga0334979_0000587_65_544	F064515	N/A	MTPKPKFTQLAERMGVDVRTITNWRKRDGFPHDGTVDEIKAWADSHGLGRVGGSGGGLADLKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLDLLLRLKLTIELGPRGVGMNAAELNVEGAAILAEIREVVNANIATFEAEALDRSRGSA