Scaffold Ga0334979_0000566

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000566
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27948
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F008688	Metagenome / Metatranscriptome	329	N
F013524	Metagenome / Metatranscriptome	270	Y
F019476	Metagenome / Metatranscriptome	229	N
F022636	Metagenome / Metatranscriptome	213	N
F030360	Metagenome / Metatranscriptome	185	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000566_10168_10566	F099167	N/A	MNLVMNIKILNRTIDIAKAMCPLNLEHRCSHIAFLIRCGKIVHIGTNSCKSHPKTLEYDYKNHQLVGLHAELSVCMKSGKEDLKDFKMVVLRVDRTGKLNNSKPCCGCQSVIKQFNVDEVWYSNSYGQIVKN
Ga0334979_0000566_11703_11900	F019476	N/A	MNNINNKTKSARIILDIEWEAVDGSDLPSLWDWKRIKMPMDLTKVKYIGIQTPNGPENVTNWMGN
Ga0334979_0000566_12556_12795	F013524	N/A	MKTNQEVISRLRQFTSYNCNNLLDAKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF
Ga0334979_0000566_12782_13006	F008688	N/A	MNRFNKIMLGSLAAILLTAMTIEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE
Ga0334979_0000566_609_1130	F030360	N/A	MTEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDNYQKWNESITADELRETYEDDIFNCLFEYDLDGYNLAEFLRDKVHLEPDAGLVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGIRKYENLYITGIRPDTYQVTISDDSKKYGGYIVGFENVTFID
Ga0334979_0000566_6179_6568	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDCTYDNSFQYVIVYDKDGNELPPLKKTAKECRANWNIDNLPIPNTSSGHYGASESDEPLEDVVIPLTIDIPELYIKEN
Ga0334979_0000566_9185_9421	F006018	N/A	MKKYSIKTNDIGMCMSVGCDFYQTCSHNSVNMFYKTKRKFDPVLDESLCLSYGSGKNTKDYVDNCYPNVLKKIYESGY