Scaffold Ga0334979_0000523

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000523
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29314
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (35.42%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006262	Metagenome / Metatranscriptome	377	Y
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F011216	Metagenome / Metatranscriptome	293	Y
F078377	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000523_17453_18232	F005024	GAGG	MTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQAREAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKIIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVATIYNQAMQKAMDDELIELTNHMTEAMLANGKVLEDNGIAIK
Ga0334979_0000523_18247_18702	F009398	N/A	MTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVAGGFQDNVASRILVKFSDWKTCDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0334979_0000523_19871_20020	F001272	N/A	MIKIELTQEQANQLLQLIDIAVKAGGIANAKAALPLVDIIVNAAQSKPE
Ga0334979_0000523_21870_22130	F009147	N/A	MAVQADISTEYSMGREGFELFTTTAAQTGAWSGLIPIEPTVFTSITGHRIAGTWTSKTIPAGFPLVGNITGFQISSGSVVAFNARA
Ga0334979_0000523_22188_22364	F005633	N/A	MRLATTISVDKNGKTKLLAGPEVDASLQRTAFNTATVPEGGKLILWIQGALAPKVRKG
Ga0334979_0000523_26070_26477	F006262	AGG	MFTFTVAIKRSYLRAVYSTLGGVTLLAALSAKSVAASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYELAVYLLGQDGIAAPTDTQVFNKMMAVVLVAVTSYGGDFSNFRREGAIRTGMT
Ga0334979_0000523_28364_28996	F010611	GGAG	MTQREYAKHAGVSHGYVTQLAAKGMPMHSPEAADAWRKKNIRAKSTTQQIETEPTPQAPVIEQEGPYRPAEASNHINTATASCDSPEGAYERQRQIELEAYKLVVVAMREGRADTARLVSIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRKVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELTRWVQEVCLKTLHNTDPWKT
Ga0334979_0000523_6043_6228	F011216	N/A	MISKTPRTDRQPVVTVAFQHFVKAGFARQLERQLAGANKRIKELEAKVDELNDLKKWLEG
Ga0334979_0000523_8512_8757	F078377	N/A	MSNAITIQLPTEKSYWGSTATEADVYRIIGNLEMMIRSQFPDVDIDFQHIPEPRGRGIWGDDGSLIDSIHQYIQDNWTAAL