Scaffold Ga0334979_0000520

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000520
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29371
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003327	Metagenome / Metatranscriptome	494	Y
F004451	Metagenome / Metatranscriptome	437	N
F006111	Metagenome / Metatranscriptome	381	N
F008079	Metagenome / Metatranscriptome	339	Y
F012974	Metagenome / Metatranscriptome	275	N
F015420	Metagenome / Metatranscriptome	255	Y
F019928	Metagenome / Metatranscriptome	227	Y
F039632	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000520_10116_10454	F039632	N/A	MSDTLKEIADNLGVTTINGNYLSGIADYYGVDLATSTDLMKDLLTAVGGDPSTSTDYLQDIVIELGQDTTVNANWMEAWLLATTGPVFSDDRITEDGDNRFTEDGLYERVTQ
Ga0334979_0000520_17743_18186	F006111	N/A	MISYQSIVDKIIAFYDNHLQVKKVGSDFKEQMGNFATIDEKYPIIYVVPTGVTPYENVTTFNLEIYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNISVVIKSWTNCQIPEQFS
Ga0334979_0000520_24661_24822	F019928	N/A	MKHSGVLSIIVFSLGYLTGISLLFEPALYLKLAGASIIGYLTFILALQMEGEE
Ga0334979_0000520_27566_27697	F015420	N/A	MKKLINYFTPVGAEQIAIAKAFVIVISATLSILFLFTFLEFIL
Ga0334979_0000520_28000_28206	F003327	N/A	MTEFTQLAREVQDEIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEEI
Ga0334979_0000520_7338_7538	F012974	N/A	MFTEAEQVIIQYVFSLPEKEQSYKTHLLKLKAIKDSLLGYEKECFCGSVRRKIWLKDFKQWYETYT
Ga0334979_0000520_7600_8049	F004451	N/A	MKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIRDDMQYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKNDLKQLRDEN
Ga0334979_0000520_8039_8266	F008079	N/A	MKIKDEYIGTKVSHKGKRCILSSDRFEFFQSIGLGHMFEEPTVSEPKVIKYKAVKGPIPTPEPVVEDTEDGTEAE