Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0000484 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0000484 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30424
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (37.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30424

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (37.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F043238	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000484_10884_11144	F009202	GGAG	MLAGTAMWLAKQAADKANGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDSL
Ga0334979_0000484_11141_11371	F010908	GAGG	MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRAQLCKCK
Ga0334979_0000484_11362_11781	F025437	AGG	MQMRPFELRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIEKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0334979_0000484_14050_14376	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYIEESYNEDGYTNTTAYPTTSIYRNIPNLDNDIYIKWMNWATQVASEE
Ga0334979_0000484_14594_14776	F043238	N/A	MKYQTISQLLRELKSADISESILKDIETIEQLHLRFAYHDALLRVPFEQWYEATFKTETK
Ga0334979_0000484_7651_8070	F014228	N/A	MNGLTNLRMPLNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0000484

Overview

Ecosystem & Geography

Associated Families

Sequences