Scaffold Ga0334979_0000442

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000442
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31733
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038642	Metagenome	165	N
F060834	Metagenome	132	Y
F063618	Metagenome	129	N
F065741	Metagenome	127	N
F085402	Metagenome	111	Y
F099218	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000442_17334_17927	F063618	N/A	MKLPKNWNEISIAQFQELQLLTEPSFDNQLKTLSILSNKKLDTIEEMRIVDITAALAKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIAAQFRERMPISFAYAYTLFFSLCLPQLLEATQVYLEQEVEKLKKIADEKTDQPSVG
Ga0334979_0000442_1745_2023	F085402	AGGAG	VATEKQTETGQTHEVSEQTQVSKTIPRTRKMKLKNYFQPTPKRFRVLGDSIAAASLFVAGLNLDHPKLMLISGVCGAVGKFVTNFFAEDEKK
Ga0334979_0000442_19011_20207	F065741	N/A	MAITINTEPNDVAPVYSDVSYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYGGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVIAYNAAGSVIATSYLKLPWTPSTADTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEIYRFDVVEECSKYVPQYLYFLNPLGGFESVRCSMASRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYATEKTKQVVLNTNWLNEVEFEWLQDLIASPVVFLGDIPVNITDTNYEVFDYIDGPNNLQITVEYTEPERLQNA
Ga0334979_0000442_28553_28930	F038642	N/A	MLYITKAGTPELIITGREKVTVSPVYYLLVFESEMSQEQKAFIVTDTSTAPNRYQLFSFVEGSSTAKTLAVGTHYWALYAQTSPSNTNPLLASQEIDRGLAYVTASHTAFNDHEVNTTIKQHHIG
Ga0334979_0000442_4602_5006	F099218	N/A	MMDIVNLLFDVEEGNASALDAFCHLTRLEKQIKAAKEQIQSQAINEAQMYGKTFQHMGFEIQCRSGAGRWKFDHLDEWSAAKMKMNTIEDLAKWAYKSEEKGVLPVTDDGDIIQPAVYVAGSDTIALKEIGHAE
Ga0334979_0000442_6722_6934	F060834	N/A	METTKKVNSKELLKHAFNMMMMLKSKAISVEEAKAQSNLLKQSNNLLKYELDRAIAVQKFEHLEIRNIEE