Scaffold Ga0334979_0000416

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000416
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32738
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F020354	Metagenome	224	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000416_10856_11119	F003378	GGAG	MTTDMGIKQNATIARFLDLGQRLFSLFLARALPAVTGGALIGVSVAKAAILAGAMAVLEVVQKLASASTDGELTTDEIKTAFSNGKK
Ga0334979_0000416_11109_11285	F020354	GGA	MFKKIGNEMLALGFTLGASAITIMTLSGSIQNWALFFTILSLALHLAGTATQGDGDDN
Ga0334979_0000416_4750_4974	F041769	AGGAGG	MTYDPDALRLMHDEAQTRIAELSTALSIVTDQRNNLEDSLQAAIKELFHKDTQITQLNSTVERLRVHIAQGIEL
Ga0334979_0000416_5461_5868	F033428	AGAAGG	MSRTEGALVDAKHVSLLSARFQMIPEPCRTTIRDINDESFGSISMTPATERRVGIARILLEIAEQEGHIDKDLVRSVCMHRTGKQYQSAGLALADLSYIDAERVWSSLQDIYAERAVLEYIPVSNHYIIKEKTHG