Scaffold Ga0334979_0000414

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000414
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32831
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F025648	Metagenome / Metatranscriptome	200	N
F043816	Metagenome / Metatranscriptome	155	N
F048093	Metagenome / Metatranscriptome	148	N
F054663	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000414_15107_15466	F017271	N/A	MITNFEEITKELTEDEKKLVPIIIKGLSTKTKDNPIKAADIVNAINENKYRYGIKLFSEPRLRKIINFIRSEGILPVMGTSNGYYCTKDRAELQSQIESLTQRAEAIITSANGLKKFIL
Ga0334979_0000414_15463_15621	F043816	N/A	MKQLINLRDWVDQQCKTGQPFTCADVLNKIDEILESDNDIEELLVTSCYEME
Ga0334979_0000414_23126_23734	F048093	N/A	MNAQEAILKIKALFEDNAAPVKEDEADMTKVEETKVEMAEYSLMDGTKVEISALEVGGLVTIEGQPAPAGGHELMDGTEITLDENGKITEIETKVVEASPEVDTEVEAGADYKDKKMQEMAEQFEAKIAELIDAKNVSDAKVLDLENKVKQGFAQVAELIEALSNTPSEDPIKKPNSFNEFVNTKGIKEQRLEKYRNAILNK
Ga0334979_0000414_6098_6841	F025648	N/A	MEIQKILTQLPQVANEWTTYPSGLIAKEDLPIIEAFKGDKLNLVSPVTLRENLAYIFTLIGLTRLPDTIELEVIEDFIRSTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKQLTDHEIVDFTKEDWLNGKREDFNRVFNADKVFKILLKQGKLTFTQDQILETINVVREDNLYRLNRMHPLDAKKFSQDIRREDFIELQCKKLALVKYFESLSS
Ga0334979_0000414_7976_8197	F054663	N/A	MEIKQEHREWLTANIGNYECAKNGYIRNLDLDDLKMYEHIYRSYLDPNFIVSVWCGACKFEMVMRLYQWFEKQ
Ga0334979_0000414_8668_9342	F020651	AGG	MNIAVILLSLNRNDLTKRVIDQNFFNSGYDADCFLVDNGSDQVPYDLFNWANCNVGNKRGIGAGVNAGLNMTRGYDGVCLLANDILLPQNWLSNWVMFAQRVPKTGIIGIHCVEELPPLQDGIHKTHVPFGDNFITRELIDTIGGYNTEYDPYGMQDRDYAERAIIAGFTNYYIPDLRSEHIGHDVGNGTDYRAMKDASLQRAQAIWEKYQPIYHTEKKLRCEF