NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000274

Scaffold Ga0334979_0000274


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000274 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40664
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (43.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004694Metagenome / Metatranscriptome427Y
F033772Metagenome / Metatranscriptome176Y
F097193Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000274_15468_15866F033772N/AMPTYLTLDCELRAETDPQTIANLERKGWVVTVPPSYDPATEQPPVWENCGWVVKPLPPPQPYRVSKDTIVSRVLAAGKLNDLITLTNGLPEDQAYLWNNFAWFWDTNPTIIAMCQQLGLDPAVILAPDPYLT
Ga0334979_0000274_23480_24346F097193N/AMKRILIATPLKGDIPRSYFKTSLQLAAAKIPDVKLDWCLLEGPAVQQARNELVAYAFEHKFDELVWWDKDVLAEQHGEDVTAGALLRLLKHDVDIVCAIYATRSLKTHWHMHLIPGEHANEEGLQKVSRSALGFSKMKMSVFKRIAELNSWRRGILVDPNHPPHPLHEFFPMGLQGPGTPERRLETIRETLGEPAKNNDIMVERIKRLVDLKYDEPNVFVSEDYWFCDLVQKAGIDIHVDTKLIMAHSGKVALPIETPQLLEMLSEPWRKDEIKAIKAEMLAQKEAAK
Ga0334979_0000274_35559_35813F004694N/AMNNEIAIQPVSVWTATGTKTAVKFFPRYINYQNGPAVADCQLLDAAGAEVASQLVNATEAQTATWTSDDAFYKVLAQNAGLTPL
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