Scaffold Ga0334979_0000271

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000271
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40776
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (83.87%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F011647	Metagenome / Metatranscriptome	288	Y
F025215	Metagenome	202	Y
F043220	Metagenome	156	Y
F073073	Metagenome / Metatranscriptome	120	Y
F085116	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000271_1259_1480	F043220	GAG	MSANNVDYANDIILALTRDELETVRESLRQFSIINTRNGFEARAKNADNLRDKIVNIILDSVQRKIDKEQELV
Ga0334979_0000271_17945_18253	F001706	AGG	MKHWEHHPTPIEGCFGCKGLSLQMNTGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTMRHVQEAHRASEVLGKAYDADTMPKTKDITPKAAAVMKEIGQI
Ga0334979_0000271_18616_18759	F011647	N/A	MSSGQRKRHDGFNKSIMRDGMIVILRKDGREKTRFDPKTKKEIKGQK
Ga0334979_0000271_19470_20210	F001599	AGG	MSKKDSVALVWCDNGMVDGKFMQGVTDVMLKSGVEFATSLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNKDVEKRPIITGVYFTTDNPEEPLMIPMPTIFNFIVGDEGGFGLTRVHPMPVNQLIKVDAAGMGFVLMHRSVVPKVREVSQDGQIFMEMGRGTKFIGEDIFFFALCDKAEIPLYAHTGALAPHMKRFSFDEHYYNAFFGKPKEEPKSKLITPDKKIITPR
Ga0334979_0000271_30852_31016	F085116	AGGAG	MSEIVNNTFWAVFYGSTLGTLTVYLITSLLDEYRSNKNRKEIELLMEEWEDLED
Ga0334979_0000271_39225_39437	F073073	N/A	MDKYMISSDEKMSTGFAKSIILNDGTSKYSGRLHWDSFDGYSMTWDTQQPPEADRPEFEYVLDCITDLER
Ga0334979_0000271_39457_39717	F025215	N/A	VSENQTQKRIDMKLKVHHPNGDVIAEVYDYAAGALLMSLYGDGSYITYKGASVWEEGTDGEGAESYDTVGMVIDSRLISMGVQVDG