Scaffold Ga0334979_0000239

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000239
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43123
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (42.86%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F012111	Metagenome	283	N
F026825	Metagenome / Metatranscriptome	196	N
F044466	Metagenome / Metatranscriptome	154	Y
F071018	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000239_1_555	F044466	N/A	MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLEPATELATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKNIGSALRGEVSQDVASQLQRSSAGRALSGGYGAGSGVGRNLAARDFGLTSMQIQNQGLAQAQNFIQQQRTMGMAQPFSISSMFITPAQRIG
Ga0334979_0000239_15721_15915	F026825	N/A	MTDHHAFIRDISIGVGGPIIGILGNAVLSDPHLKTASLALGAFAALLTCAVKALELYRKLKTEK
Ga0334979_0000239_18929_20167	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0334979_0000239_2349_4196	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSSLRRATTDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIVENDQTSLLWSGSAVVFDNRLLMTAQPRYNAQGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDTSFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0334979_0000239_24250_24846	F010673	N/A	MNPKLLPVLEKLISRDVILQFFKPDNLPQSALAYIRHTYVMCRSLSWEEQDLIETLAPFADDIADSFREDESSDASKYHLFQDGSLWLSTNAYSSIWTDARDFAVEILLPRMTLSRMDADLLRAIDMDDAVEGVKQDFFHAFATVLREDGIFCADAREHWHAWTRQLGNSLTEELELGGSESGRAEGIRFASDYTINA
Ga0334979_0000239_25898_26131	F002227	N/A	MKLTIQSKANAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGHQILELIIEREDGDVLCPGTPDLETL
Ga0334979_0000239_26391_26636	F001964	GGAGG	MSRNQFAPPKYKVQLSGAIGWSDMKEKVVSYQTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDIYPTLERPKP
Ga0334979_0000239_27257_27850	F071018	N/A	MKVSLGDVDNIETKSEFKVRMSYLENGSTHRSLFRLMPPLHHDADPNRSQVLAYIRENLICDIGRSIRAFNSMRHPKSKVVVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAKTMGESGGDENQKTLVEEFNEIFGKKSEKPRKTKHQQPASTIESMVAAAWK
Ga0334979_0000239_30437_30874	F003748	N/A	MFQVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPMAEVDGDDLDPKPF
Ga0334979_0000239_32262_32459	F001259	AGGAGG	MRDCAFIYVHAFNGLIRVESLDTAKHIDGNPEWKHVATINPHVVLEQILRAKGKERNQIIKHLLT
Ga0334979_0000239_7148_7777	F004664	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIQIPSNLDDLITEYACRNGANCSYNEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET