NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000239

Scaffold Ga0334979_0000239


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43123
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (42.86%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F001964Metagenome610Y
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F010673Metagenome300Y
F012111Metagenome283N
F026825Metagenome / Metatranscriptome196N
F044466Metagenome / Metatranscriptome154Y
F071018Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000239_1_555F044466N/AMAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLEPATELATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKNIGSALRGEVSQDVASQLQRSSAGRALSGGYGAGSGVGRNLAARDFGLTSMQIQNQGLAQAQNFIQQQRTMGMAQPFSISSMFITPAQRIG
Ga0334979_0000239_15721_15915F026825N/AMTDHHAFIRDISIGVGGPIIGILGNAVLSDPHLKTASLALGAFAALLTCAVKALELYRKLKTEK
Ga0334979_0000239_18929_20167F005388N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0334979_0000239_2349_4196F012111AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSSLRRATTDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIVENDQTSLLWSGSAVVFDNRLLMTAQPRYNAQGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDTSFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0334979_0000239_24250_24846F010673N/AMNPKLLPVLEKLISRDVILQFFKPDNLPQSALAYIRHTYVMCRSLSWEEQDLIETLAPFADDIADSFREDESSDASKYHLFQDGSLWLSTNAYSSIWTDARDFAVEILLPRMTLSRMDADLLRAIDMDDAVEGVKQDFFHAFATVLREDGIFCADAREHWHAWTRQLGNSLTEELELGGSESGRAEGIRFASDYTINA
Ga0334979_0000239_25898_26131F002227N/AMKLTIQSKANAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGHQILELIIEREDGDVLCPGTPDLETL
Ga0334979_0000239_26391_26636F001964GGAGGMSRNQFAPPKYKVQLSGAIGWSDMKEKVVSYQTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDIYPTLERPKP
Ga0334979_0000239_27257_27850F071018N/AMKVSLGDVDNIETKSEFKVRMSYLENGSTHRSLFRLMPPLHHDADPNRSQVLAYIRENLICDIGRSIRAFNSMRHPKSKVVVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAKTMGESGGDENQKTLVEEFNEIFGKKSEKPRKTKHQQPASTIESMVAAAWK
Ga0334979_0000239_30437_30874F003748N/AMFQVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPMAEVDGDDLDPKPF
Ga0334979_0000239_32262_32459F001259AGGAGGMRDCAFIYVHAFNGLIRVESLDTAKHIDGNPEWKHVATINPHVVLEQILRAKGKERNQIIKHLLT
Ga0334979_0000239_7148_7777F004664N/AMSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIQIPSNLDDLITEYACRNGANCSYNEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET

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