Scaffold Ga0334979_0000196

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000196
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48301
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (77.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012854	Metagenome / Metatranscriptome	276	Y
F034897	Metagenome / Metatranscriptome	173	Y
F076851	Metagenome	117	Y
F088773	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000196_12111_12329	F012854	GGAG	MISAIYKLYPQVKYTIDNVAYDANDNEVAYDLAAVTAQAEADVQAAKNAKISALAKLTALGLSEDEVKALIG
Ga0334979_0000196_18646_19173	F076851	GAGG	MGFFDSLVPTEQYQAQTLAKQSGGQGTPIPMAPMQPPVPQQFAKGGLAAANNQIQQTQVMKVIANYFKNKGLPVEPAMEGVKKEIENGLKLIPFESSVMGFKSLGNDVAQIHFFTVGTMQDLANDMQYFYKYLKDKGIKTVYDSIPAPITTQIFDRLGATIVKSDKPDFKFKATI
Ga0334979_0000196_39342_39485	F088773	AGGAG	MKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDVQTQGPFKPIGC
Ga0334979_0000196_5989_6168	F034897	AGGAG	MFKKGADGIEKKGKTDVKIYPNDGPKVIDNGPKSSKSSLNKNMKAMGRNLARCSNQRGR