NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000140

Scaffold Ga0334979_0000140


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57775
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (75.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000843Metagenome / Metatranscriptome864Y
F001827Metagenome / Metatranscriptome629Y
F027163Metagenome195Y
F065560Metagenome127Y
F088775Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000140_17850_18128F027163N/AMAYSQQTINMVMKAPKTLGNQLGRWAVHHNFSVVRISQALGVSRQSVYNWFGGGEVFVAYRPTVDALLKILQTSSTADEAWRKTCKAFNLDN
Ga0334979_0000140_33298_33705F000843N/AMPLYQIRPNELPQVWPIAAPMLQKAIDLDPDLITIDQVEYSVRTGKTFLLVWEEPEEGITGAVTVEFIDYPRERVAHVNLMGGKGIVRDYVFDDAKQWMRLQGATKAQCWAKGTLVQMYEKMGMENTHQVMRIAL
Ga0334979_0000140_429_968F088775N/AMKGEVLMTITSKNCKDCQPKRKPPSKQTPKQLHNMVVSGDISEARAKQILAERQRMAVLLQSRARYEAWVDKWRKQLKETLAPMTYEIHKVKAQIRYAAQAGHGEYEGLLEKYESVLRREKGRILLDFEADPHKYKSIKENWWDLVSEFGVESLRDRWISIRKEDKANMKVPELLARRK
Ga0334979_0000140_51290_51478F001827AGGAMNNDIKTMTDGAAVVVGLGGFMGWMTPVVALIGGVLTIVWMTIRIWETETVKNLVAKYAKHE
Ga0334979_0000140_8876_9079F065560GGAGGMIDDPEDEAFNEIERQAQQRKEAVKANVSLNPYRAQVIEEVAQAIEKMQGFGQDTINSFAIFIRGLK
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