NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000070

Scaffold Ga0334979_0000070


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79412
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (35.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009264Metagenome / Metatranscriptome320N
F009682Metagenome / Metatranscriptome314Y
F070892Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000070_3277_3504F009682GAGMEKELYLKDKYPVVSDDLKFDGKNIIIPSYYSDIIHDYLDRVDAKDMNDADYQDYLAFRRFFKDIMNYKADKGGN
Ga0334979_0000070_73421_74119F070892N/AMKHYIVYFINGSHKYLQSSLDLMENLDRLKLVGIEYEVVDYIVPLEKHIDQSILEHRKFLPDGNSIWKKENLIDKKVKEMTAKRNALLQKLDIDFIISLETPNNKQTEVIKNNKKFLRELSCRTEMQHIHDCEKINKFNAFCNIIDIQIIDPGYGCSEPVPCVTISPPEETEYNYGLTASAHAVRGSKGELLSLTMEKLGCGYISDPEIKISGYESESAKHPIVKAVIGNIM
Ga0334979_0000070_883_1290F009264N/AMRAYLEFSFIDQELDHLDKIGFGAKIIDAYEMENGFVAVVVDWNSKTDSYKLKYASQGCVTYSNDKIVGVQLEFRDYPYKIDDCQMNPRISVKLDYDDFNKKMDYVCFHNLKYQAVVYFAPDSWNCSRKSKKIKF
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