Scaffold Ga0334979_0000026

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000026
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117412
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (69.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F016958	Metagenome / Metatranscriptome	243	Y
F025943	Metagenome / Metatranscriptome	199	Y
F034902	Metagenome / Metatranscriptome	173	Y
F038479	Metagenome / Metatranscriptome	166	Y
F046876	Metagenome / Metatranscriptome	150	Y
F056609	Metagenome / Metatranscriptome	137	Y
F057416	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000026_15952_16278	F057416	N/A	MTRYHHKPIKKFGLDGVIHDESAIGRLKAEYIRLIVSEMRLSGYVPRFDIEPDFTIDYNEKKRYFEFELTIHGIYVGRKQIEWIVGIDGNKPIYTHKSRSNEYSQDLA
Ga0334979_0000026_54121_54783	F046876	AGGA	MKNQSEYGDATQPSTSKSTKEHKFFERQIDINNLEDLEVFLLDQYKRIERGEVVKQKLNDNTPWDNSGSITTMNWNKYNVFQMYDPNIHTLFRAVRDMTKDACDYYELDFTQEQFMVQGWFNVNYNHIGKLDWHEHGGDGAPYFHGYYCVKAEPSITHYRVFENEIENHNKNNRAILSETGHPHAMGDWDWDGPRITMAYDVIPLRFIPKEWEQHWIPLV
Ga0334979_0000026_69783_69968	F025943	AGGAG	MDKLFAVIEDNKVVNIIVGVEDEVVAAKPGKYIEYTNGWDYNNGIDGGVFFPEINLSEEN
Ga0334979_0000026_77358_77540	F016958	AGAAG	MKVTITTMSGKEMDMDLPTKENVQYFIELYRNNLKKNQRVKVTCDLLGIDGYLQGTAPIR
Ga0334979_0000026_79215_79358	F013526	AGGAG	MKKNVLISFVTEADTDLQAVFNLNKVFAKLSENELEKFDAFEVLPVE
Ga0334979_0000026_79543_79719	F038479	AGGTGG	MTTLTLEQKIAKAAHMIADGECVSFRGASFDTYMKVERLANRIKQEREFPQCPCGECD
Ga0334979_0000026_8146_8322	F056609	AGG	VDKYSIYEGKFPCKTCKKEVRTIRVYVKTGMASWMCPEKHLSEVQLFKVGYKKVKIND
Ga0334979_0000026_84277_84540	F034902	AGGA	MISTALAIQGATKDAVHDESIMDMARSIYQNKDYMSADDFAKAMFMYSASLSALTATLVTHACLTENQINDMLETIQEMESMGKDIE