Scaffold Ga0334979_0000025

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000025
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117565
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (16.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004953	Metagenome / Metatranscriptome	417	Y
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F030735	Metagenome / Metatranscriptome	184	Y
F096923	Metagenome / Metatranscriptome	104	Y
F101005	Metagenome / Metatranscriptome	102	N
F102856	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000025_112538_112702	F096923	N/A	MIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK
Ga0334979_0000025_112947_113141	F030735	GGA	MANLIFVWYLLTGTVQYQQTMDGHKQYALFFEDGKVIDYAYKGEILEYIETGTFEYNEDLELSK
Ga0334979_0000025_113632_113904	F010462	N/A	MLYQLPNGKVVHLSIEEYLSLTDLDIQFLMSIDYGEHILDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDIPSDDLPFDDIIDLEDPLDN
Ga0334979_0000025_117281_117556	F022861	AGTAG	MRAICIDASNRPSKVPDSEWLIEGEVYTITRVVRMGLQENKFGVLLKEVKLSTSSFPYELYDAERFLPIDLLSQAFEETKETVKEADLELI
Ga0334979_0000025_16239_16595	F004953	N/A	MSEKTMMLVKSSWQESQTFRMIPLTESCPYVECIFDPGTNVFVIISKTTKQSLHMLPKLDEYGQTITGTKGTKQDRHKIEVFQEFYVEDLEAVENIIHFFCVNADTFDYASFLTAEKK
Ga0334979_0000025_19746_19943	F102856	N/A	MKKKKMKIEFNGQEVYINFVSEDNAYVIVSKDKEGTLGKFKLNSNEIKGVDLNKLKKFNKKPKKV
Ga0334979_0000025_6144_6725	F101005	N/A	MYNRRDKERELMEHHSGYLDKLGSSYQFIAKTAFYSKGKFGRQIQLFENELNKGSDIYVELVDIVRDAKGMETDMTPMYWERPLFKCRYNPYFKEEYEVKVSTNSRGDEYTAYIIPTSELVCVNKGSEEIPYNEYEKNRTTEPVEQKKLSVFPDFEEEFVPKLKDVESSGDVSAILLEIAAGFQKLAVAFKNK