Scaffold Ga0334979_0000004

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 210328
• Total Scaffold Genes: 274
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 201 (73.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F025678	Metagenome / Metatranscriptome	200	Y
F050412	Metagenome / Metatranscriptome	145	Y
F056543	Metagenome	137	Y
F085608	Metagenome / Metatranscriptome	111	Y
F095373	Metagenome	105	Y
F105034	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000004_10374_11129	F001360	AGGAG	MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPSQGLPTWYTDSEDDRFEIVIPKGTILSVVANASGDAMVVPANGSDASVTWGDTISGWNPLAGATPNVTRSGDTVAVASYSTPIGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVTAVNDDVTVGSLIKADHMGRPVNLTTTLCGTNPYLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVFELTRSGTYSGKLGIRSNLDVTNVIGAFRVNLTL
Ga0334979_0000004_12708_12866	F025678	N/A	MENLMSFDFIENFTVKLPDFSKMDFSFKESSDSNQGLIIEVAAIHEGLTRKL
Ga0334979_0000004_137700_137936	F095373	GGA	MAAGKLNYIVTYEGLSQVFGCASKKIALESPPPEGYSLKHKKVLFITFEPDKNNLCVYPVPQEEVMGAEIKSKKQSDE
Ga0334979_0000004_142415_143110	F085608	GAGG	MSIQSIEALATNGALSFDVAEKYLTIYLGEADWKEKIGQLWTVQKRRLGDEQQAKDFIKKSVACACLSPIINKSAIPDEKHVLLFWVGGWPQFNERDWFDLFKSIAKKDLEIEKNRKIVLQSGIFNQIDVSPLTRQAFNWIYERTDKESFSTDEKKQEALEKVKNLVKIYGGAIICNVFTNYPMNIEKVLNWRSGYFIEKEIYKVYSLEQILKIKKAELNKTNPKYITSIK
Ga0334979_0000004_29507_29917	F105034	GGA	MTNWESFINESGDFELPNFLYRTINDLMKQSLDMGTLLSNDQHKLRAYKEQTKKMFKARWFEIAKALEFFNIIDPCICSLSEKELYCDVCKGARFIISSTLTADEMKEVGFFINAADNLEIVNKLQKSLNEILMDR
Ga0334979_0000004_42010_42309	F056543	GGA	MKVHTFKEGIADLFSRDLVEGKRRGEIYELFEAKSMAEFKDEASDIAWGVGRLIGALMNKAYIRVPGDKIHYNKVVARVEEYGCMRSKRFLIEGKCPNS
Ga0334979_0000004_52259_53269	F050412	AGGAG	MSNPSILNKFGLSGDLFSAIAENIDNLQSTARTQSLVVGKTVKFTGSINGVEVPAEVTLREANLSRLSVLRQSSPYTGKEYLLVTGVMNPVKLDLNVNIDGNSMSIVDLLHAFAQDGGNVIERQKFEDSLTAMGMNYSAGMPLFFQQFGANEEGIKHAINAFKAAGAIDVTGSIENPGRIVAAYQHQTGVPMTSFELGTTDREKSRTNQGFLNLVDASVQTFQRVYGLRLEAHVLGQKISDLPQAKVKEAEEKRKELLALSRQWVTNWSGSQQRIKVEKNGSKTPQNVYDPVNAPCGRFSLAVQGEIVSCDLWSNSARAEQTSVVVGATETEEDPF