Scaffold Ga0335003_0204296

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0204296
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 944
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0204296_3_212	F002398	AGG	MMLPLLHIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTIGIE
Ga0335003_0204296_406_597	F002406	N/A	MENLKWIRAMSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDKE
Ga0335003_0204296_661_882	F010618	GAGG	MTLKDLIFKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEIEEED