Scaffold Ga0335003_0080536

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335003_0080536

Scaffold Ga0335003_0080536

Overview

Basic Information
Taxon OID	3300033995 Open in IMG/M
Scaffold ID	Ga0335003_0080536 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1708
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055417	Metagenome / Metatranscriptome	138	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0080536_1_291	F055417	N/A	TSIRINEDRTATLYDANVTDGNSVFWNDVNNRRISWILAYMCDSGKVLYVTAPVGITTSANFILPEQNNELQRYEVTFSWRNKNIPAQYDAPPGVF
Ga0335003_0080536_291_1247	F070850	AGG	MTEQSTSTTTQSITPSTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVNITVLFDDPIKALSHCHDLMQYINHIGHIALEDIYTNKKLDPGKVKVNLYKYLPYDRNLYLDVDAIALKDIQPMIDELSQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYCTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIHGIDPALKAYTPNNGSEGGMIHFAMQRGLTYQEITHNYYLQSYYGGAGFTPRFYIDWLDRMLAADFKAIGKRHIYLISRIAQNKYADGKR

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