Scaffold Ga0335003_0055199

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0055199
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054031	Metagenome / Metatranscriptome	140	Y
F071229	Metagenome / Metatranscriptome	122	Y
F093858	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0055199_1208_1372	F071229	GGAGG	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNNDSANHDDFD
Ga0335003_0055199_883_1002	F093858	GGAGG	MIDLHDPAAVCRSLGYFLDFLTLTVPVLSLALIARRIAR
Ga0335003_0055199_999_1211	F054031	GGAGG	MSAADWDAILANRDKAEALPECDWTTETPETEAAVKASGSTFGIPLRETSRRLERQRNGLYQLLNRRATQ