Scaffold Ga0335003_0037852

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0037852
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2601
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F017972	Metagenome	237	Y
F044984	Metagenome / Metatranscriptome	153	Y
F060700	Metagenome / Metatranscriptome	132	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0037852_1232_1381	F083706	AGGAGG	MQHITPRGWLVAGILIGLAVWGLWEVASHLLWTGSGWEWCEDLLDCEDK
Ga0335003_0037852_1732_1974	F001477	AGGAGG	MSNIYTIHPKKSDLILFYEVVEPDGSNTWGGASAEQCIQWLSLAPANSRVLVSAWDSDEEDAHLVGQTLDITDIVREASL
Ga0335003_0037852_2044_2343	F044984	GGAGG	MTDEVKKRMATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANAADDLAYSSNAGENEGNNGGEA
Ga0335003_0037852_2340_2600	F017972	GGAGG	MRTRHLSLVTQRHSVTTTTRSNACSPYGPVNPASTTLLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVIAMEGVRVAL
Ga0335003_0037852_382_714	F060700	N/A	VLRDGGGCAILTPSTQSRADFMKGLQMKKTLKELAAELNIDEKYFDNNFLMLDNRYAVMQDEKGLHLTDVLSWASFSPIKIGRQSNATIKGLQFQLGQYKVYIKQLQGAK