Scaffold Ga0335003_0020264

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0020264
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3575
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F013279	Metagenome / Metatranscriptome	272	Y
F040479	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0020264_1185_1358	F013279	AGGA	MKYDYKCPQCDSKLTIERSIHEDAKDPGCFECHVTMARVYDAPGIQFKGRGFYSTGG
Ga0335003_0020264_1735_2367	F004110	AGAAG	MIDLHPVAYDLASAVASTIYRRYKNYVEKDDIKQECMAWAIGRSAYINQQMLEPDEDKRKHNESRIAYQMRRVAERYARKEKALKSGYQTADEVYYESAKLGQLLPFVIASVVDGTVLEQIQQMIQDGQPKGKSSPSEGGNLLATLIDIKRCFLKLDVQDQTLLRLRHFDNYTLQQIAGQLECAVSTADRRCNNSLRKLINLLGGQSPWQ
Ga0335003_0020264_20_307	F003863	N/A	MENRQVSGVQAIHHRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTRTRANAVPDVAGRTDYDRTDESNDGGEA
Ga0335003_0020264_391_600	F040479	GGA	VNPASTTLLAQETLKANQEARLMELLNSLESVVDNLNFKSFTVYDTLVTAIEGVRVALSPTPIEEGGTK