Scaffold Ga0335003_0011182

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0011182
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4702
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013755	Metagenome / Metatranscriptome	268	Y
F016253	Metagenome / Metatranscriptome	248	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0011182_2722_2997	F059002	N/A	MNILNEIKNGISRLLGVHKTLETKETPKTLKPKRTAKRGRGRPKGLKIPRAIVDAVLQADKSISNKQLAAKYRVSCFWIWSVRSKKLRLKR
Ga0335003_0011182_3164_3424	F058715	GGA	VAGGKTVSLLEKLGLTKQSMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHSSYTCRELAKKYGISSSTIWDIRDSKSKTE
Ga0335003_0011182_3403_3576	F013755	AGGAGG	MSDTPISDSTPHNVAELGILCRRLERLAAVRLAYITQLETENDAMRADLLLWREAKP
Ga0335003_0011182_4057_4212	F016253	AGGAG	MSDRMQSIIKEGTGVYSISKKEAGEIHKAAKKVKNYAVSYWTRNRKNKEVK