Scaffold Ga0335003_0010560

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0010560
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4824
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F014228	Metagenome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0010560_2620_2994	F014228	N/A	MWILPMAATLAALSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALVLVGGYIVKRWVDKLTE
Ga0335003_0010560_3779_4135	F009600	N/A	LTYKIVVGKVPSLNAFYASKHWTSRVKAKELVSKEVMSQLDKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDQSIGKDTAEITFTGLLVSE