Scaffold Ga0335003_0003105

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0003105
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8173
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F026794	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0003105_3038_3379	F026794	GGA	MPDFHNSISDRDFNVTASQLRHAENDAREATRGEVTFDELDRRYADPISREEAVALRPFFEAFCENRVVWCYELMERHGRPMHTWTPITEWDGHFRPECLSLTYRTDNPFATE
Ga0335003_0003105_3837_4127	F009945	GAG	MSTALATFKRTHGVATHRLTGAGHRYPWMAFFATITMKDGTRRAFTELAHGYSMATLAMRGKVTEGADELSACKLLAERNGIPWPADEPKKRKSKP
Ga0335003_0003105_831_1145	F011473	N/A	MNWKKYITDPLTNRPKRGAISRIAALLGTHYGCVRRMFDGIWTPTDEEAESLSAIVASRTNLAPKKRSDAGKKRAAYRKRAVAKSGVAAPQLKALRSAKNTALK