Scaffold Ga0335003_0001599

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0001599
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10902
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033329	Metagenome	177	N
F065376	Metagenome	127	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0001599_5672_6235	F033329	GAG	MSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPKDMPHNAKLIYDAIMKHPMLRLIFEKSAKEITFIKSIDIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRTFAADMTKHYNHIQAVWYSYLTGFDPANFYYIGVPNKFKGELFIHRHTADEIRTAETLIRDYLVHRGL
Ga0335003_0001599_7236_7814	F065376	N/A	MIEGAPQAIEDKLSYDMSAESIKAANDAIKHIETNRKMVTSPLDAYKKSVMDVERDATAPLKAYIEQRKAMMIDYSNDLERKKAEADAKIAQDAADALISASSSDVSNIFATFTDATTTITLEIDHTKNIRITKKAEIVGEVDWMTLLWTLMQAEMFDVQELLRKLPKAMEITNIAEIRGIEIVERKTQAIR
Ga0335003_0001599_9207_9851	F100269	N/A	MESAYKYISFATIIVLLFLLLKTCSNGVEADYRLKHTIYEDSVLIASQKKIIAQGSSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMLQGKPYIQLPKPFLKTTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFVNRLLKKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKVGVGVLIGVAAVSAVK