Scaffold Ga0335003_0000643

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000643
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16819
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (2.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F021963	Metagenome / Metatranscriptome	216	Y
F028489	Metagenome / Metatranscriptome	191	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000643_11048_11467	F048248	N/A	MNISVTYDDTDVAKALGKIIKDPNAEEFIKLITPMICTSSYATEYFFKLMLGNKLFNVIPNGTLCKIPVNNLGYGSNKDAIRQKFADEDDKVVVIVKEFRGYHEYSQYHIEYTSVLDNGVTKKDTTYVQHKDLEVIEEF
Ga0335003_0000643_11619_11900	F010462	N/A	MPVMQYQLPNGKVVHLSIEEYLDLTDEDVQYLMSIDYGEHVRDPFTGSAVENNSKEKYYDFEFLSQDDEILNDICSDDLPFDDIIDLSDNLDL
Ga0335003_0000643_12543_13031	F000716	N/A	MIKMEKLKQQIKDYQLYAGKTYIEYEQDKYSAYQNYLYKRALYGLDAIEQKELVTMCSKKKQRIINVYKRAQSILNIAKQKATIHYTNLLFKTFFPKSPFTQLLLGETETDEKFKNTLTFKDLNISKDDIINIFITEGVLPKNFLSLDKDPNQLPRLKNEKL
Ga0335003_0000643_13810_13986	F021963	GAG	MVKVNGCGHGATDVHHTHSGVNRDAFYLVQSTWLSVCRNCHNWIHLNPAEARILKHLK
Ga0335003_0000643_14008_14745	F028489	N/A	MKTIGKELKVKHTIEYSKFAILPMNRGIDSKHVQKMITSVRKIGVIRAVITTTTNIIEGDKKTYIIDGQHLATALEREGAPIPYIEIDITSEEELIEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEVSMLACIATNMPSIRYGTQPIKNGSFTISNSKAEDMCKAFNDIFLKIGMADRGVKFQFLNAFMVAYGTYNHTKVLANIDKHLKTVKLMANGDETGVYIRKQIFNLPK
Ga0335003_0000643_16372_16809	F074450	N/A	MEDYTKDDVIKALSQIPVNSRKRVLVDQRSYLMGLLVYRFMMTEHAIANIVGIKRDKVHYNKKLALQLCTDKSYMQNVYVYAQMFPFDFSVIEATSSVHRLKTVELVLDKKFFNKLKATGSVLGHNDIRTTIKFLLEKSMKLWEE