Scaffold Ga0335003_0000626

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335003_0000626

Scaffold Ga0335003_0000626

Overview

Basic Information
Taxon OID	3300033995 Open in IMG/M
Scaffold ID	Ga0335003_0000626 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17066
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066572	Metagenome	126	N
F070996	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000626_7534_7986	F066572	N/A	MTTITWMDNRKLMEEMWPKWKLEPVLSSLLNEKWGSLHQDKLQACIRQHRLVRDFKPEIAAIHKAYCALIPQNLVGEREVEQTRDDLQRCTPPSERELKEWDDWAETMLNDVTVRELEQVSDFIGHVPESRRILAVAVEHVRLNTKRGNR
Ga0335003_0000626_9622_9939	F070996	GGTGG	MTKQIMQIDVLSEWVTDDRAAEYLSEHVVTATLEVHWQHHKPGHYTGVHGWELISWNILEIALDDVELTDQDIVPSDFPMTEVRAAIEDAEPVRKYIAARPPEDA

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