Scaffold Ga0335003_0000609

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000609
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17258
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus → Methylococcus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049614	Metagenome / Metatranscriptome	146	N
F074551	Metagenome / Metatranscriptome	119	N
F096872	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000609_10733_11257	F096872	N/A	MAFQNPIFNGNLYGGLTRFAMNGFAQTQRVATANAAGIKFAQMEAFAKAPTKSVLVTLESATLHAANRWTYAVKIWFPTPIGGGGITVPTTDKSGTYATAVNLREWHNTSTLVDGMNISTAPAATVGPVGSIYDSGTAQWPTGQLSAKVELHVCHDSSGAVFAYFDRPNPLRCT
Ga0335003_0000609_3525_4010	F049614	GGA	MTNSRMKGKNGELDACRALEKLFPFKWERTAQRYGKGKADIEAQCSWQIHVEVKRRKSGYSYVYGRLKSDPLISSGSLLICRLSRLMQVMDDGICLPNVAPRCAGLEDAMLQARTDARVGWLPIVLARQDDEEWLLAWREEVDTRLMEEVRTWLDGSTKPI
Ga0335003_0000609_4007_4252	F074551	GGA	MTQPQSLEDQILQQVLVIQALRLRIARMESIYTTPRTIRSTGQNGTTEDTRHQRDTIEEYGPNTPRCVTDQEVEQAEDDGA