Scaffold Ga0335003

Basic Information
Taxon OID	3300033995 Open in IMG/M
Scaffold ID	Ga0335003_0000455 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033995 Open in IMG/M

Scaffold ID

Ga0335003_0000455 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20057
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (37.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20057

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (37.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064660	Metagenome	128	Y
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000455_18899_20056	F064660	N/A	MADITKPIPAEVTNVYASKAARIMKPSDKQRVSELEIVDDNATGDVVNPDTLQVKRTFKDCQQAHSAYRRLKQQNTERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRLQPPFKQVIEQSPTLTYSKYPLEGVSEEHKTKVFREEITKCIRGWKGHDDLVAQVTHENTTFGFCAVCWDDVRDWKPEFLRQDYTFFSIETPQEADSTPIWARKRRYQIAELLPVLEQPRLSALAGWHINNLVKAINNATPAGRTLDSDDDARRYEDWTREGSYGASYENDAKYVELGELLIKEPTGKISRYLFDDKSGDEICTQLDRYNRMSDTIALFSIEIGSGALMSSRGAGRDLYNTHIAIEKARNLIVDNSYLRGMLLL
Ga0335003_0000455_3152_3499	F081331	N/A	MNELNFDKLTGNGWKQFKDFLNQSDIAFYQTFAGHEECRCNEGKKKQVEVYIYDHRKYGYPSIGYEVKCTGELPDGTWLELKSYGLSEDFVDSKAQELLEVWDWSVKINLTTSRI
Ga0335003_0000455_8302_8583	F080908	N/A	MNDPLYTSEVERLKECDKDYRSIAAQLSVFCSAAIFALRASNKELEDAQVKCDIVPDPFAEQAIDDMFQSYLESLRDYPELMAIALKFIQESR
Ga0335003_0000455_9670_10074	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYADNYKPPSRRLLDTLVKHAPKLPLVKVPKAKATGKDCVAKRNPIYTLGITRFSTKTLDVDNLAGGCKPLIDQIRYSKLIPDDNPESVEITFTQVKVRTQAEQRTEVRITKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335003_0000455

Overview

Ecosystem & Geography

Associated Families

Sequences