Scaffold Ga0335003_0000276

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000276
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25477
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F073100	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000276_11229_11603	F073100	N/A	MDNTNDDKVIDKEAERMLAAVRQTVLITNMSLAAALNTSLLAEYESEEGICNMALKPNNTAILATTSATGLTIYKSHFFIKDDAIGEQRHIYKCENEDDADTLWATINDKMFEWSRGEIKSVDI
Ga0335003_0000276_12594_14444	F023326	N/A	MSRIFSGNTGIQKYGIKFPENMDELGVELYCYAISKGEYGKDYCNKHNINLSDFKLLTPYEHFLKAVKLQWPTEVSIVNRGYTNNQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGQSNFDTVSPEMDKWDTETGVCLFYNGMRSPNFAAPENEPSPFPFLMDRKKQQVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLKHDSSGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRTLFGVDPSSELARELCLRRYTIKNKKISIETKDDLKGRTGYSPDLSDSLIYALEMARRSGLVFIGTDKPVPTNRFWARDEKPTESIMDDDYSTDDWGED
Ga0335003_0000276_14469_14858	F021128	N/A	MKGKMKLKNRNLAPVGSWYYRYEIKRDKLTFPAVVYGSTWSNLISNIQKDCRSNGIDVPSNLEQLVEDQICQRQPSDRCWYADGIGDRIAQAIHTVAAVTDKVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0335003_0000276_19194_20606	F025268	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGQSGHKWMGITTDDGTYCGLVDDGAWFVPEHTLNNEAGYDLCAIRVKIAPADLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADSAFNATLPAYNEADPATWARLVRVPRYIKTVLEQGCAYIPNRAYRTADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPC
Ga0335003_0000276_21339_21602	F027487	N/A	MACFTSLPYRNKLYPLLITVSAAAGITPISFGCFDAASDASKLYQFYLAFATIGSLTPVTENCFVQTTEDQQLFVLNEAVAAALPVT