Scaffold Ga0335003

Basic Information
Taxon OID	3300033995 Open in IMG/M
Scaffold ID	Ga0335003_0000243 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033995 Open in IMG/M

Scaffold ID

Ga0335003_0000243 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27826
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (6.06%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

27826

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (6.06%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F012010	Metagenome / Metatranscriptome	284	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000243_12056_12475	F048248	AGAAG	MNISVNYDDTDVAKALSKIIKDPNSEEFVKLITPMICSSAQACNQFFKLMLGNKLPDVMPVGTLCKLEVSQLGYGSNKDEIRAKYADADDKIVVKVKEFRGYHEYSDYEVTYNNIKPNGDINIESTYTSTRQLDIIEEI
Ga0335003_0000243_13550_14074	F000716	N/A	MYMIMEKQNTKQKFEYSGNLENYQLINQRPTVMQYETDCYSQYQNYLYKRALYGLEALSPQEMSAMCSKKKQRVINVYKRAQVVLNKFKQQVTIQYTNVFFKTLFPNSPITDFLLSEVETDEKFKNTLTFKDLNISKEQIIGIFMSEGILPKNFLSLERDPNHLPRLKNEVKSM
Ga0335003_0000243_17895_18329	F074450	N/A	MEDYTKDDVITALSKILMNSRQRVLVDQRSYLMGLLAFRFMMTEHAIAKATGIKRDKVNYNKKLVLQFCKDKSYIQNVYVYAQMFPFDFNVIDSSRPNRLKRVELDLDQKFFNKLKATGSILGHDDIRITIKFLLEKSMKLWEE
Ga0335003_0000243_25888_26478	F012010	N/A	MEEIFNRLIKEDLSPNTYYVLHCIKEKIVPNQFVNAALESKRLQKDNWINDDLQLTAKSHIFMEEINSFFRKSKKKTSRDLMGDEFSQKILEYVNIFPNKKLSSGKYARVNPKNLESTFRWFFETYDYDWETIISATERYVDEYSLKNYEFMRTAQYFVRKQNMDKSFDSDLATYCDLKKSGYDDDNYDAFKELVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335003_0000243

Overview

Ecosystem & Geography

Associated Families

Sequences