Scaffold Ga0335003_0000215

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000215
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29587
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F042901	Metagenome / Metatranscriptome	157	Y
F049628	Metagenome / Metatranscriptome	146	N
F059968	Metagenome / Metatranscriptome	133	N
F066786	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000215_11809_12054	F049628	GGA	MKFSEVIQHLMHGKPITRACFDHDVYIRYSDLYEAFVMHTGPESKTLQGLTLDPESLFATDWMWGEDHPVKDEIIWTRTTS
Ga0335003_0000215_12051_12623	F059968	GGAG	MSKNTSIEERKLLMVRIKDLRAAGHNIRRTAEIMDMSEKTLHRWIREETPDRPVKKMDPYISLDEKTATVIKWAELIASGETRSKAADVVGYPVMMINRWMMSEPSLRIEFQECIGKKQNNWGGRKSFEQILVDVRAGRPVWREGARFKLQLVESALMRYELDGANVWRCKGFATLSGNDVLARDWTVIE
Ga0335003_0000215_17985_18467	F066786	AGGGGG	MTQERVDLKWKCGHTAHITVGYTQGDLKYKMAMMASTLQICAACENKRSIERAWSLTQRLLEPNPIVMSGSEKQIEWARSIRTTKYEALAHVLDCLRQAYETRQDEWPAIARAISPVVNDVSIWRSYSQSGAIIDRRNINWTTAFRNALSRAGLHIGGLA
Ga0335003_0000215_20252_20473	F042901	N/A	MARKPADNQPAIERVEEKPQGLMWLLKASEHEILERLNQDGALIFIHPALDGIVSFRIEENPAHDQKVVHVWR
Ga0335003_0000215_2810_3037	F006623	AGGTGG	MNLQNYRLEPNPLSPGDWIVFGDITDDAGNILATFGPDGTSVFGWWVTQDVQFQQNYSNQFAVVMAQEIVAGTAE
Ga0335003_0000215_28138_28515	F033435	AGGA	LSNSIFDNIPKSDGRPNHVVDIERFIGAPGSFTFREPKASDLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSEIYLYVVGEFAKAFPIDIEAAVDEVPND
Ga0335003_0000215_28975_29457	F031872	GAGG	MVESLVVDEWIFDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDNGQDDTTAMCGGRILTSSVHQVWCWDTQSGAVSMARIKSIVDRIDTLLNRQTVNTTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV
Ga0335003_0000215_3034_3285	F001733	GGAGG	MNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFSGTQMNALKVGK