NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335003_0000140

Scaffold Ga0335003_0000140


Overview

Basic Information
Taxon OID3300033995 Open in IMG/M
Scaffold IDGa0335003_0000140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38106
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (27.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038674Metagenome / Metatranscriptome165Y
F080979Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335003_0000140_16403_16603F080979N/AMQHKPINMTKISSKEENNYKLLKEGQDFLVGDLIHLVDDEYVKLNENNQLLKTKVTKYNKVLRKVK
Ga0335003_0000140_8793_9179F038674N/AMDRKGFFKTLFGGFVAASAAPSLIKAEETPQPPQYLSVNKEILKIDSDGNLGIGGSSNIGLGTSTPRNKLHVGGIVFHVNDRMLEMAGDENGDFKIRWLDPKENETVNTIVIHKPKDDPWKREFVKIG
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