Scaffold Ga0335003_0000136

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000136
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38937
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (81.13%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043366	Metagenome	156	Y
F104776	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000136_35925_36809	F104776	AGAAG	MSTAGALLDRVSRQLLSGTIEERNKLALSVDSDDTSFVMSYELAGLRAGTVFEVDSELIYVWEATSGNKTLIVERGYGGTTAASHATGAIVVLNPRFPKAQMLEALNQDIDDMSSPLNGLFRVISADVSYNGADRQVNLTGATSVIDLLDVRLRYLNTDYPVIRRSRLQRDLPTSDFTSGYAIVFDEMVMSGTLRVRYKAPFSRVSSVSDSLQSVANIPVTMEDILEMGVMSRMLSTREIKRNFIESQGDTRRSDEVPPGSMRDSFSNILRLRRDRIIAEAAKLARQYPLTIRV
Ga0335003_0000136_4625_4921	F043366	N/A	VEKNPMTLTNRTVVYIQWADTHLSEPGWLNMDDYEDDGECLVDTVGFLIPVGEPGSKEKHITLWQTICEEEGIHAIHIPVAMVREMKAIDLTLTMSHP