Scaffold Ga0334996_0112523

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0112523
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1568
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F024743	Metagenome / Metatranscriptome	204	N
F034825	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0112523_1235_1567	F034825	N/A	MTTLEQLLADHTILIQKIIAEAKNEALNDAPKTKITITNSSIPPVQTKLDLFSHISSIFDNLIKEKKDKEMLTPYANPYNWPRNTNCWAKSLDLTGYAACIVPLGGVGGGT
Ga0334996_0112523_193_372	F004723	AGTAG	MNKGDKFIHTDILGKKYEVTYTGTRRIVKDCEFEFFVDDKGGGCFFTDTEVKKMKRLEE
Ga0334996_0112523_2_196	F024743	N/A	MNEAQLYNLYSQDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYE