NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0088718

Scaffold Ga0334996_0088718


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0088718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F024477Metagenome / Metatranscriptome205Y
F037570Metagenome / Metatranscriptome167N
F039941Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0088718_1245_1496F039941N/AMDIETLALRLEEIKLSRTEVLEEKKVLAEELLDGKLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQSS
Ga0334996_0088718_1486_1710F037570AGTAGGMNIKKLDLLKIRNLKFRASQRQVVIDRLLRKEDLERDLWRVSIKTLIILAKIKFRCEELERISENLQQTVINGY
Ga0334996_0088718_512_739F017597N/AMKIFRSEKLLIKLAIKRKELIKIVKSSKSTLIKTEMITRILITALKARQVIAIRFQVNRTNNLQIWGRNPNILST
Ga0334996_0088718_726_989F024477N/AVSYDIIKNSSKASSLELLIKNITLVERVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLIELEKFQTQRIKELIKNRFNEDL
Ga0334996_0088718_93_488F019778AGGMSSNAASQAELIFLYIGESRLIKRISNDILLVLHEDTKSINTIKLKELLQFKIRGRLSYLNHLAMSTVREEAKYASALYTQLDSLLAILNLDDKITAIKLITKICSAYRASKVTVQGTVQISNNIEKMEIG
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