NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0080410

Scaffold Ga0334996_0080410


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0080410 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1941
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0080410_1181_1660F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAEYLVAKRLGYEYTPGITWDKSKADVGNHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNPSQNNWSVPQINLQPIETLQRSNYAHSIV
Ga0334996_0080410_1641_1823F003182AGGAGMHILLFDCSICSKLYGKAKQRHGLKKGAELTAHEWFAQCMSCGTFGIKIVDDERIVELSQ
Ga0334996_0080410_364_993F012452AGGCGGMATFMDGYEGNKERTDRWIATFPLGRLEAHIIEFNAEKRYVLIQAKAWRNQTEVEPAGIDYAYGYFEAYSPKMARWMIEDTSTSALMRVMALVMGGAEKATKEVMELVKSEAPAADYDYWTTKHGDVPSFKDRADAEQAGEPSFGSSEDSAWVTNSVPNCSHGQRVWREGTSAKTGKAWANYSCIGKKPDQCEPLWYVFTSRGKWEPQV
Ga0334996_0080410_975_1184F000403GAGGMGATSMSDYMEIINPQQMIGRLYFQGEVVEEYKVEQCDKCSQIRKFDAFGYQKGFDSTLNIIWFCGDCR
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