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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0055347 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2441 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027829 | Metagenome | 193 | N |
| F041161 | Metagenome / Metatranscriptome | 160 | N |
| F079522 | Metagenome | 115 | N |
| F083616 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0055347_1217_1621 | F041161 | N/A | MMSRQIADSIEFANDFLPARTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACARARNIPARAVIVGNSSQAPTHIYCQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH |
| Ga0334996_0055347_1811_2224 | F027829 | N/A | MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYIAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKALVSAFKKLSNFIDTASPNLENKLSQELMTYDQWEKEYFERKNMGIININREEYKK |
| Ga0334996_0055347_2247_2441 | F079522 | N/A | VPYDVAIWWHLAFDVDKSIFNPTYIPADLMEEIQQLQRRSIIKALPDSDPGRKWLILRFFPEGI |
| Ga0334996_0055347_447_1217 | F083616 | N/A | MFLQLHDGPDLPYGTSRYPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYAEFVPQNANGWKVRLDQVSSGQKLVKDYQTLRAAKGTGSAPIYSADGTITGFQQASKAQEVAAYIELGLKALRLAQTGVQAGEASRLKEDAQKLYNENKWGIADVCNQTLVQLQNNAQNCYDSLNWWIKDQGTPGKTAGQKRIANRSVVIRQNALLILVKEIEAKGGSFTPGGKGAPVGIAAILALVAGAAFLRF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |