Scaffold Ga0334996_0047098

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0047098
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2688
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017133	Metagenome / Metatranscriptome	242	Y
F021757	Metagenome	217	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0047098_2192_2371	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSGMFEADNPNFKHEIFREACLKNNF
Ga0334996_0047098_617_781	F017133	AGGGGG	MSIWTRFPTVNNYPQGMMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVK
Ga0334996_0047098_781_927	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKSLMPLSENEISKFDAFLVEEAQ
Ga0334996_0047098_927_1106	F048982	AGGAGG	MISLELQDVLATCRQIRGNDRDSGTHYLLGYLWANTPDKEKVRIAKLFNNDLLEQEKNK