Basic Information | |
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Taxon OID | 3300033994 Open in IMG/M |
Scaffold ID | Ga0334996_0032072 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3352 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043354 | Metagenome / Metatranscriptome | 156 | Y |
F049561 | Metagenome / Metatranscriptome | 146 | N |
F096905 | Metagenome / Metatranscriptome | 104 | N |
F098924 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334996_0032072_1_357 | F043354 | N/A | MILKMYIMEKLKKQVRDYQLYAGKTYVQYEQDGYSTYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIQYSNAIFNMFFPNSPITQFLLADTETDEKFK |
Ga0334996_0032072_1378_1806 | F049561 | AGAAGG | MTKIRLELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPQVLPEGTMITVNPNRLSYKTNVDGMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKTYEDTGFITYQDIITVVEEL |
Ga0334996_0032072_1799_2017 | F096905 | N/A | MESKVFTSVIGFNFELNLVDNDGQPVKVGARRIDYLSSETPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND |
Ga0334996_0032072_2007_2321 | F098924 | N/A | MLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKDELLKLAFKSYKDHDLFTTSCKVAVAECTHINEVVYLMTMLTKIRELECNPLSSLLSHLSHGE |
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