NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0032072

Scaffold Ga0334996_0032072


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0032072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3352
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043354Metagenome / Metatranscriptome156Y
F049561Metagenome / Metatranscriptome146N
F096905Metagenome / Metatranscriptome104N
F098924Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0032072_1_357F043354N/AMILKMYIMEKLKKQVRDYQLYAGKTYVQYEQDGYSTYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIQYSNAIFNMFFPNSPITQFLLADTETDEKFK
Ga0334996_0032072_1378_1806F049561AGAAGGMTKIRLELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPQVLPEGTMITVNPNRLSYKTNVDGMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKTYEDTGFITYQDIITVVEEL
Ga0334996_0032072_1799_2017F096905N/AMESKVFTSVIGFNFELNLVDNDGQPVKVGARRIDYLSSETPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND
Ga0334996_0032072_2007_2321F098924N/AMLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKDELLKLAFKSYKDHDLFTTSCKVAVAECTHINEVVYLMTMLTKIRELECNPLSSLLSHLSHGE

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