Scaffold Ga0334996_0032072

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0032072
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3352
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043354	Metagenome / Metatranscriptome	156	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0032072_1_357	F043354	N/A	MILKMYIMEKLKKQVRDYQLYAGKTYVQYEQDGYSTYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIQYSNAIFNMFFPNSPITQFLLADTETDEKFK
Ga0334996_0032072_1378_1806	F049561	AGAAGG	MTKIRLELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPQVLPEGTMITVNPNRLSYKTNVDGMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKTYEDTGFITYQDIITVVEEL
Ga0334996_0032072_1799_2017	F096905	N/A	MESKVFTSVIGFNFELNLVDNDGQPVKVGARRIDYLSSETPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND
Ga0334996_0032072_2007_2321	F098924	N/A	MLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKDELLKLAFKSYKDHDLFTTSCKVAVAECTHINEVVYLMTMLTKIRELECNPLSSLLSHLSHGE