Scaffold Ga0334996_0024846

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0024846
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3872
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019816	Metagenome	227	Y
F025481	Metagenome	201	Y
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0024846_1130_1348	F033030	N/A	MTEKKWSASAWKNTTAKGEVINFTINDVKYSMWKNAYKTEDKQPDFKIYINDFNPENKTYSKPKEDTEGLPF
Ga0334996_0024846_1690_1926	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTNLEPLAYGQDLDTNPGSNEV
Ga0334996_0024846_2863_3084	F025481	N/A	MTHLTTYQKFQYQRYGNILLQDGSSTQNPNDPRLLPKNYDYEDDDYTFALWVDSTFERWTEYHSHLKIQANEN