Scaffold Ga0334996_0018671

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0018671
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4521
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004405	Metagenome / Metatranscriptome	439	Y
F017265	Metagenome / Metatranscriptome	241	N
F022813	Metagenome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0018671_1225_1863	F017265	N/A	MNNIVNYSFGFLEGVQKGKKIFLDKLGKGVIEALAQYVDVEARSNPKALHHVYEWNQVGSPTSRLFNLNYTVSNIGLSINSTFRQSRSVSENMTVPFYNKAKIMEDGSPVTISPTRAQTLKFSGPNGDVFTKKPIKVDSPGGDDVAGSFESTVDIFISRYFKQSFLRASGLYDYIKKPKLYKTNFKAGSKMGKSKGVETGFKWIANATIGVE
Ga0334996_0018671_1902_2351	F004405	GGAG	MAVCETTDFMYPMKADIYFPILTQGDYGQPKKDWVYDRTIICNATPVGGVGTEDIKPEAFLQYENKLIARTTNDPRLSSNGSYNAITNILITNIRSDNDSVIYRETAGARTGRGTIYEIATVEPFTGPFGNTEYYKMLWRRTENQTVGD
Ga0334996_0018671_651_1220	F022813	GGAG	MTILTDTGFPPTFLNGYILSELAYHGLVAEADLLNPSPMVPAQFPTNIEDLYNDSIAIRQTESPLLLVYDRLMRFRPSPFYMRKREQLIYFLYSTDVAKLIDSVRVISNALDREDSSAQDINSWAIANPVLNSQGDTIPYNIFFHNTRVYQADESRDVAELASARTLFVNKIIVEYDYHIKTESDSRYT