Basic Information | |
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Taxon OID | 3300033994 Open in IMG/M |
Scaffold ID | Ga0334996_0017437 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4685 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021066 | Metagenome | 220 | Y |
F066715 | Metagenome | 126 | Y |
F072826 | Metagenome / Metatranscriptome | 121 | Y |
F083632 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334996_0017437_15_230 | F021066 | N/A | MAHATLRYDLSDPDDEREHRYALAGREALIALEAIEQHIRGRLKHGEPTDARRELEEIRSAIPYELLNLLQ |
Ga0334996_0017437_2031_2387 | F066715 | AGGAG | MSDATISRKYRDFDITLHSATSLATTLDMRDVAGAIISIGTMSTNASTLQMWVGGTPTGTFRRLYKVDGSVADLTLAPSSTEGRAYSLPDEVFGTEFLKIVSSTTNSTGTTGFVMFKS |
Ga0334996_0017437_2712_3053 | F083632 | AGAAGG | VSLEDLDAAVWASLSARKHLAGRPLVSRLVRRVVRKWPTVAIAQARPDSYGVMLEQVATSIERSERQNVRMGIILSLVLGVLIQEIVKAILAWWMKSASNRIALVGWQTEMRR |
Ga0334996_0017437_987_1253 | F072826 | N/A | MRFFRTADEALYESVRLQLDAAWGHPTPDGVTLTCFDPLAVAPRDSAGRVLLAVHDEFCEYEAVAAVLPQLLASTAVEEITSEQCQPA |
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