Scaffold Ga0334996_0016473

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0016473
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4826
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022870	Metagenome	212	Y
F032251	Metagenome	180	Y
F042303	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0016473_238_444	F042303	GGA	MGRQMINIYSKTYYRIENAKYYLSNALDTTKYHVSNVVDSIRYAHDETWLAIALVTTWVACAYIASVN
Ga0334996_0016473_2483_2794	F032251	N/A	MNENMLSMISETWQMLTIIAAALGVGYAMARRFEGLLGKDKKGNTLLERIERIEAQVHPNGGSSMSDKIDYIRRDQNKMKQQVSEISGEVKVIKDIVTAIVEK
Ga0334996_0016473_596_817	F022870	N/A	MTLLLVGVWNKYDRKGCVDKYTADILTTQFLYGEGIDVDRAMTAIYNNGGWVEEELTPDVEVIFPCLKNEGLV