NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0014593

Scaffold Ga0334996_0014593


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0014593 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5170
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F091931Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0014593_1220_1483F002794GGAGMSEGCAWNQGELTEETRRMVMEQMMTTRHDMAIFDLINQIADTSTNPHASIIRRLRAMKNSLSLEEPMPLHDVTTLDLAIKALQAHS
Ga0334996_0014593_1480_1983F091931GGAGMNYFAEKIIGLVLCTVFGFTVAVGAPDASGSPSGTIALAPYLLEPSTTTSSTSSTIYIDPYTSACEQFSALAVNLGWPADQRTVLESIMFRESRCIPNTVNSKDPNGGSRGLMQINGFWTPWLIDAGIITDVENLLQADVNLRAALAIYNYGVNRHGYGWGPWSATK
Ga0334996_0014593_2197_2727F001872N/AVAVAKAKAGVPNARDYIGNADGPFAGPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSERQPKAGRKEALIFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWQKYDKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA
Ga0334996_0014593_806_1198F002421GGAGMKTCTICKETIAYPDIQGKTHFVCDGRVPATKPFAVGMALSQASADTKWTPEEQRKVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
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